Protein Structure Analysis
Analyzing the protein structure of your protein-of-interest can be advantageous in multiple ways. It can help you discover regions which are good candidates to interact with other proteins. It can help you discover new domains. It can help with identifying differences with homologuous proteins and a lot more.
Extra
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Material
Lesson | Slides | Hands-on | Time estimation |
---|---|---|---|
Protein Structure Analysis
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slides | ||
01 Exploring the Protein Data Bank exercises
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tutorial | 30m | |
02 Visualize a structure
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tutorial | 1H | |
03 Compare Structures
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tutorial | 15M | |
04 Predicting the effect of a mutation on a protein structure
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tutorial | 30M | |
05 Predicting a protein structure - homology modelling
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tutorial | 30M | |
06 Protein-ligand interaction - from small molecule to protein
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tutorial | 30M |
Maintainers
This material is maintained by:
Alexander BotzkiFor any question related to this topic and the content, you can contact us at bits@vib.be
Contributors
This material was contributed to by:
Alexander Botzki , Joost Van Durme , Janick MathysReferences
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Switchlab: Home of FoldX plugin
More information about FoldX plugin and troubleshooting -
Wikipedia: Wiki page about PDB
wiki page explaining information on PDB -
YASARA developers: Working with YASARA
Movie tutorials on YASARA